PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G119865_P01
Common NameLOC103629531, Zm.145058
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 177aa    MW: 18561.9 Da    PI: 9.674
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G119865_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.51.2e-164897255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +y+GVr +k +g+WvAeIr+p   +kr r++lg++ ta  Aa a++ a  +l+g
  GRMZM2G119865_P01 48 QYRGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSTAVAAACAYDTAVFCLRG 97
                       69*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.3E-3147106IPR001471AP2/ERF domain
SMARTSM003805.8E-3748111IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2148107IPR016177DNA-binding domain
PfamPF008471.9E-94897IPR001471AP2/ERF domain
PROSITE profilePS5103222.41848105IPR001471AP2/ERF domain
PRINTSPR003675.7E-124960IPR001471AP2/ERF domain
CDDcd000182.19E-2254107No hitNo description
PRINTSPR003675.7E-1287107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MEVDATAFCP PPQPAPAASP ASKPPAPVLG AGGAVAPVAG HGRGGGRQYR GVRMRKWGKW  60
VAEIREPNKR SRIWLGSYST AVAAACAYDT AVFCLRGRSA RLNFPDQLDG AAVADNPEDG  120
AGLTAAAIRK KAAEVGARVD ALHCGGGTSP QPLSFHRRRP KNPDLNREPT PETSDDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-1746109367ATERF1
3gcc_A7e-1746109367ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G119865
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G119865_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9556828e-95EU955682.1 Zea mays clone 1542257 dehydration responsive element binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008648850.11e-126PREDICTED: ethylene-responsive transcription factor RAP2-9
SwissprotO221742e-42ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A096RYJ31e-126A0A096RYJ3_MAIZE; Uncharacterized protein
STRINGGRMZM2G119865_P011e-125(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.17e-29DREB and EAR motif protein 3